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ath1 microarray chips  (Thermo Fisher)


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    Structured Review

    Thermo Fisher ath1 microarray chips
    Ath1 Microarray Chips, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ath1+microarray+chips/pm39409177-323-12-12
    Average 90 stars, based on 1 article reviews
    ath1 microarray chips - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    other:

    Article Title: Functional Analysis of Arabidopsis Postprenylation CaaX Processing Enzymes and Their Function in Subcellular Protein Targeting
    Article Snippet: Unfortunately, AtRCE1 (At2G36305) is currently not represented on the ATH1 Affymetrix microarray chips and thus whole-genome analysis of its expression is currently unavailable.

    Microarray:

    Article Title: Coexpression characteristics of trehalose-6-phosphate phosphatase subfamily genes reveal different functions in a network context.
    Article Snippet: doi: 10.1111/j.1399-3054.2008.01101.x Arabidopsis thaliana databases are available that highlight the behavior of the transcriptome under literally hundreds of experimental manipulations, making attempts possible that integrate this information into gene networks.Wepresent and discuss the functioning of a gene networkmodel generated using deposited microarray experiments.. Based on a graphical Gaussian model, the network describes conditional coregulation of genes under a variety of external factors and abiotic, biotic and chemical treatments.. In this study, we show an aspect of this network that pertains to functions of genes in families where all members appear to carry out the same biochemical reaction.

    Article Title: Unanticipated regulatory roles for Arabidopsis phytochromes revealed by null mutant analysis
    Article Snippet: .. To determine global gene expression changes in phyAB(C)DE mutants in response to R, we performed transcriptomic analysis using Affymetrix ATH1 microarray chips. ..

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle.
    Article Snippet: .. Gene expression was evaluated at the level of RNA accumulation from 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG [58]; the average expression level for each chip is 6.6. ..

    Article Title: Arabidopsis PEAPODs function with LIKE HETEROCHROMATIN PROTEIN1 to regulate lateral organ growth.
    Article Snippet: Arabidopsis PEAPODs function with LIKE HETEROCHROMATIN PROTEIN1 to regulate lateral organ growth Running title: LHP1-PPDs interaction controls cell proliferation Ying Zhu†, Xiao Luo†, Xuxin Liu, Wenjuan Wu, Xiaofeng Cui, Yuehui He and Jirong Huang 1 National Key Laboratory of Plant Molecular Genetics, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences (CAS), Shanghai 200032, China

    Article Title: The cell wall pectic polymer rhamnogalacturonan-II is required for proper pollen tube elongation: implications of a putative sialyltransferase-like protein
    Article Snippet: .. While At1g08660 is found in the Affimetrix ATH1 microarray chips, At3g48820 is not, but is present in the Complete Arabidopsis Transcriptome Microarray (CATMA, http://www.catma.org/ ). ..

    Gene Expression:

    Article Title: Unanticipated regulatory roles for Arabidopsis phytochromes revealed by null mutant analysis
    Article Snippet: .. To determine global gene expression changes in phyAB(C)DE mutants in response to R, we performed transcriptomic analysis using Affymetrix ATH1 microarray chips. ..

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle.
    Article Snippet: .. Gene expression was evaluated at the level of RNA accumulation from 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG [58]; the average expression level for each chip is 6.6. ..

    Expressing:

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle.
    Article Snippet: .. Gene expression was evaluated at the level of RNA accumulation from 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG [58]; the average expression level for each chip is 6.6. ..

    Article Title: Arabidopsis PEAPODs function with LIKE HETEROCHROMATIN PROTEIN1 to regulate lateral organ growth.
    Article Snippet: Arabidopsis PEAPODs function with LIKE HETEROCHROMATIN PROTEIN1 to regulate lateral organ growth Running title: LHP1-PPDs interaction controls cell proliferation Ying Zhu†, Xiao Luo†, Xuxin Liu, Wenjuan Wu, Xiaofeng Cui, Yuehui He and Jirong Huang 1 National Key Laboratory of Plant Molecular Genetics, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences (CAS), Shanghai 200032, China



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    A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on <t>ATH1.</t> (C) GO categorization of all genes on the ATH1 chip.
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    A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on <t>ATH1.</t> (C) GO categorization of all genes on the ATH1 chip.
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    Thermo Fisher ath1 microarray gene chips
    Expression level of nuclear genes encoding components of the chloroplast transcription machinery in selected mitochondrial mutants and plants growing under hypoxic conditions. (a) Colour scale represents up (red) or down (blue) fold change values relative to the wild-type. Publicly available dataset GSE 14420 [45] representing three-week-old wild-type plant exposed to 4 h of hypoxia was analysed. (b) Common differentially expressed nuclear genes encoding chloroplast transcription machinery components (ppde. p > 0.95, FC (fold change) 1.5) in representative <t>microarray</t> datasets. (Online version in colour.)
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    A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on ATH1. (C) GO categorization of all genes on the ATH1 chip.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on ATH1. (C) GO categorization of all genes on the ATH1 chip.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Mutagenesis

    Venn diagrams of microarray results and previous related study . (A) A comparison of anther preferential genes identified in our study with previously known pollen genes and stamen genes. (B-D) Comparisons between genes differentially expressed in the ams anther and those preferentially expressed in certain organ: anther preferential, stamen and pollen respectively.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: Venn diagrams of microarray results and previous related study . (A) A comparison of anther preferential genes identified in our study with previously known pollen genes and stamen genes. (B-D) Comparisons between genes differentially expressed in the ams anther and those preferentially expressed in certain organ: anther preferential, stamen and pollen respectively.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Microarray

    Gene regulatory network of anther development during early stages . Gene regulation is represented by T-bars (negatively) and arrows (positively). The direct regulation confirmed by experiment is represented in bold line. Genes encoding proteins with interaction is represented by double arrows. Gene expression patterns in different tissues are shown by colors (blue for anther specific; red for anther-preferential; green for reproductive-preferential and yellow for genes not included in ATH1 chip). Gene function in tapetum formation is marked by an apostrophe; in pollen wall formation by an asterisk; in callose dissolution by double asterisks; in stamen and petal formation by the letter b; in stamen and carpel formation by the letter c.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: Gene regulatory network of anther development during early stages . Gene regulation is represented by T-bars (negatively) and arrows (positively). The direct regulation confirmed by experiment is represented in bold line. Genes encoding proteins with interaction is represented by double arrows. Gene expression patterns in different tissues are shown by colors (blue for anther specific; red for anther-preferential; green for reproductive-preferential and yellow for genes not included in ATH1 chip). Gene function in tapetum formation is marked by an apostrophe; in pollen wall formation by an asterisk; in callose dissolution by double asterisks; in stamen and petal formation by the letter b; in stamen and carpel formation by the letter c.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Expressing

    Expression level of nuclear genes encoding components of the chloroplast transcription machinery in selected mitochondrial mutants and plants growing under hypoxic conditions. (a) Colour scale represents up (red) or down (blue) fold change values relative to the wild-type. Publicly available dataset GSE 14420 [45] representing three-week-old wild-type plant exposed to 4 h of hypoxia was analysed. (b) Common differentially expressed nuclear genes encoding chloroplast transcription machinery components (ppde. p > 0.95, FC (fold change) 1.5) in representative microarray datasets. (Online version in colour.)

    Journal: Philosophical Transactions of the Royal Society B: Biological Sciences

    Article Title: Joint inhibition of mitochondrial complex IV and alternative oxidase by genetic or chemical means represses chloroplast transcription in Arabidopsis

    doi: 10.1098/rstb.2019.0409

    Figure Lengend Snippet: Expression level of nuclear genes encoding components of the chloroplast transcription machinery in selected mitochondrial mutants and plants growing under hypoxic conditions. (a) Colour scale represents up (red) or down (blue) fold change values relative to the wild-type. Publicly available dataset GSE 14420 [45] representing three-week-old wild-type plant exposed to 4 h of hypoxia was analysed. (b) Common differentially expressed nuclear genes encoding chloroplast transcription machinery components (ppde. p > 0.95, FC (fold change) 1.5) in representative microarray datasets. (Online version in colour.)

    Article Snippet: Analysis of the global changes in transcript abundance in rps10 mutant was performed using Affymetrix ATH1 microarray gene chips.

    Techniques: Expressing, Microarray